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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
184
ATAC-seq
93
total RNA-seq
70
single cell RNA-seq
18
snATAC-seq
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
4
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
203
DNA accessibility
185
DNA binding
163
Transcription
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
130
August, 2021
114
August, 2017
February, 2021
73
February, 2023
56
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
March, 2020
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
January, 2018
1
April, 2019
1
August, 2022
1
December, 2019
1
May, 2021
1
November, 2019
Available data
bam
1326
bigWig
974
bed narrowPeak
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
595
Homo sapiens
Biosample type
597
tissue
398
primary cell
95
in vitro differentiated cells
59
cell line
3
stem cell
Organ
191
kidney
83
heart
70
liver
48
eye
46
connective tissue
45
adipose tissue
44
pancreas
36
blood vessel
36
vasculature
35
artery
35
musculature of body
25
brain
19
lung
12
epithelium
8
bone element
8
skeleton
5
limb
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
Project
531
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
106
hg19
Lab
298
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
audit script error
Audit category:
1
missing controlled_by
award.project!
T1D
files.file_type!
bam
tsv
month_released!
February, 2021
BIOSAMPLE
ASSAY
597 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
pCHi-C
DNase-seq
RNA microarray
tissue
kidney
75
49
59
6
1
1
islet of Langerhans
41
18
18
1
3
1
4
4
liver
23
20
20
1
1
3
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
3
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