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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
974
total RNA-seq
583
ChIP-seq
185
ATAC-seq
178
DNase-seq
86
RNA microarray
74
single cell RNA-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
14
Hi-C
12
snATAC-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1064
Transcription
583
DNA binding
379
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
626
histone modification
625
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
82
May, 2019
77
February, 2023
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1664
bam
1504
bigWig
977
tsv
654
bed narrowPeak
453
bigBed narrowPeak
349
fastq
199
bed bed3+
198
bed broadPeak
176
bigBed broadPeak
128
tagAlign
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2189
Homo sapiens
Biosample type
2195
tissue
806
primary cell
591
cell line
304
in vitro differentiated cells
9
stem cell
Organ
533
connective tissue
475
adipose tissue
443
pancreas
317
liver
183
heart
161
kidney
158
bone element
151
brain
109
blood vessel
109
vasculature
107
limb
73
musculature of body
65
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2129
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1544
GRCh38
1515
hg19
Lab
2015
AMP-T2D consortium
47
KPMP
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
files.file_type!
tar
month_released!
August, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2195 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
34
57
1
6
4
2
1
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
17
11
13
56
1
1
bone element
84
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