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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
903
ChIP-seq
248
ATAC-seq
178
DNase-seq
99
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
27
WGBS
18
snATAC-seq
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
4
pCHi-C
Assay category
903
DNA binding
448
DNA accessibility
170
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
February, 2023
66
May, 2022
50
May, 2020
47
September, 2023
46
December, 2017
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
8
March, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
May, 2021
Available data
1903
bam
1768
bigWig
tsv
980
bed narrowPeak
559
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1659
Homo sapiens
Biosample type
1668
tissue
709
primary cell
506
cell line
260
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
205
liver
202
heart
200
pancreas
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
1602
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
938
GRCh38
833
hg19
Lab
1344
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
25
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
files.file_type!
tsv
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
1668 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
pCHi-C
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
143
20
2
20
1
3
1
1
islet of Langerhans
69
56
1
24
1
3
1
1
4
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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