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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
985
total RNA-seq
903
ChIP-seq
201
ATAC-seq
180
single cell RNA-seq
175
DNase-seq
87
RNA microarray
27
WGBS
19
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1181
Transcription
903
DNA binding
398
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
221
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
46
February, 2023
40
May, 2024
40
November, 2019
39
May, 2021
35
March, 2020
26
May, 2022
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1902
bam
1747
bigWig
1070
tsv
932
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2640
Homo sapiens
Biosample type
2649
tissue
879
primary cell
653
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
475
pancreas
321
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2583
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1854
GRCh38
1703
hg19
Lab
2364
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
lab.title!
Karen Mohlke, UNC
organ_slims!
eye
large intestine
BIOSAMPLE
ASSAY
2649 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
271
67
56
6
1
1
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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