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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
905
ChIP-seq
178
DNase-seq
173
ATAC-seq
85
RNA microarray
68
single cell RNA-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
14
Hi-C
12
snATAC-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1056
Transcription
905
DNA binding
367
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
February, 2023
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1899
bam
1764
bigWig
968
tsv
906
bed narrowPeak
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2488
Homo sapiens
Biosample type
2496
tissue
536
cell line
468
primary cell
328
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
467
pancreas
361
liver
265
brain
221
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
122
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2430
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1787
GRCh38
1734
hg19
Lab
2301
AMP-T2D consortium
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
April, 2018
August, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2496 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
69
1
57
4
2
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
2
20
1
3
1
1
1
1
kidney
27
13
11
56
1
1
bone element
84
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