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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
855
ChIP-seq
387
total RNA-seq
178
DNase-seq
177
ATAC-seq
68
single cell RNA-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
14
Hi-C
12
snATAC-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
2
RNA microarray
Assay category
855
DNA binding
471
Transcription
371
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
599
histone modification
598
histone
303
broad histone mark
295
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
August, 2021
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1260
bam
1156
bigWig
883
bed narrowPeak
561
bigBed narrowPeak
382
tsv
377
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
11
txt
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1771
Homo sapiens
Biosample type
1779
tissue
730
primary cell
512
cell line
326
in vitro differentiated cells
10
stem cell
Organ
473
pancreas
265
brain
221
heart
167
liver
163
kidney
127
blood vessel
127
vasculature
116
limb
102
connective tissue
101
adipose tissue
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1713
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1179
GRCh38
1130
hg19
Lab
1584
AMP-T2D consortium
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
August, 2021
February, 2021
May, 2020
BIOSAMPLE
ASSAY
1779 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
snATAC-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
69
284
1
57
6
4
2
1
1
1
4
liver
95
24
2
20
3
1
1
1
1
kidney
27
13
11
51
1
1
body of pancreas
35
3
4
4
2
2
heart left ventricle
35
3
3
2
4
1
1
1
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