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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
782
ChIP-seq
426
total RNA-seq
235
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
23
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
2
RNA microarray
Assay category
782
DNA binding
614
Transcription
433
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
567
histone modification
566
histone
283
broad histone mark
283
narrow histone mark
140
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
227
August, 2017
May, 2020
162
June, 2019
February, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
76
February, 2023
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
39
November, 2019
35
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1206
bam
1119
bigWig
934
bed narrowPeak
551
bigBed narrowPeak
468
tsv
334
fastq
210
bed broadPeak
199
bed bed3+
180
tagAlign
174
bigBed broadPeak
68
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1898
Homo sapiens
Biosample type
1906
tissue
732
primary cell
556
cell line
367
in vitro differentiated cells
10
stem cell
Organ
475
pancreas
313
heart
291
kidney
265
brain
167
liver
133
blood vessel
133
vasculature
116
limb
103
connective tissue
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1840
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1207
GRCh38
1093
hg19
Lab
1581
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
February, 2021
May, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1906 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
69
285
57
1
6
4
1
3
1
1
4
kidney
27
49
75
13
59
6
1
1
1
liver
95
24
20
2
1
3
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
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