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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
855
ChIP-seq
437
total RNA-seq
241
ATAC-seq
178
DNase-seq
165
single cell RNA-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
855
DNA binding
618
Transcription
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
599
histone modification
598
histone
303
broad histone mark
295
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
35
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1260
bam
1156
bigWig
947
bed narrowPeak
561
bigBed narrowPeak
480
tsv
377
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1980
Homo sapiens
Biosample type
1988
tissue
734
primary cell
556
cell line
368
in vitro differentiated cells
10
stem cell
Organ
475
pancreas
313
heart
291
kidney
265
brain
167
liver
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1941
AMP
47
KPMP
T1D
Genome assembly (visualization)
1243
GRCh38
1131
hg19
Lab
1682
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
February, 2021
May, 2020
organ_slims!
lung
BIOSAMPLE
ASSAY
1988 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
69
285
57
1
6
4
3
1
1
1
4
kidney
27
49
75
13
59
1
1
6
1
liver
95
24
20
2
3
1
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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