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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
total RNA-seq
115
ChIP-seq
63
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
3
pCHi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
snATAC-seq
Assay category
288
Transcription
115
DNA binding
73
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
71
histone
71
histone modification
41
broad histone mark
30
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
8
February, 2021
8
February, 2023
7
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
435
bam
371
bigWig
277
tsv
213
fastq
129
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
10
txt
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
4
bed bed3
3
bedpe bed3+
3
hic
1
bedpe
Organism
486
Homo sapiens
Biosample type
493
tissue
346
primary cell
88
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
488
adipose tissue
475
pancreas
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
493
AMP
T1D
Genome assembly (visualization)
423
hg19
392
GRCh38
Lab
456
AMP-T2D consortium
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
pCHi-C
FAIRE-seq
RRBS
small RNA-seq
snATAC-seq
tissue
islet of Langerhans
271
48
47
1
6
3
4
1
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
2
1
2
1
1
1
endocrine pancreas
16
acetabular part of hip bone
1
1
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