Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
37
single cell RNA-seq
31
total RNA-seq
21
snATAC-seq
2
RNA microarray
Assay category
98
DNA accessibility
68
Transcription
41
DNA methylation
Date released
713
February, 2021
406
November, 2017
378
August, 2017
314
August, 2021
296
May, 2020
266
October, 2019
244
May, 2021
199
May, 2022
178
February, 2023
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
29
bam
25
bigWig
24
fastq
9
tsv
7
txt
bed bed3+
Organism
209
Homo sapiens
Biosample type
139
primary cell
68
tissue
2
in vitro differentiated cells
Organ
104
pancreas
86
epithelium
45
liver
3
kidney
1
musculature of body
Project
134
HPAP
75
AMP
Genome assembly (visualization)
43
hg19
5
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
11
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
award.project!
T1D
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
209 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
RNA microarray
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
hepatocyte
5
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
kidney
1
kidney interstitium
1
renal glomerulus
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
Download