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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
100
ATAC-seq
50
ChIP-seq
1
pCHi-C
Assay category
145
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
715
February, 2021
363
August, 2017
319
August, 2021
296
May, 2020
246
May, 2021
244
October, 2019
200
May, 2022
182
February, 2023
168
July, 2018
94
November, 2017
83
July, 2019
61
November, 2019
59
September, 2018
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
8
November, 2018
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
238
bam
215
bigWig
144
tsv
50
tagAlign
27
bed narrowPeak
Organism
296
Homo sapiens
Biosample type
193
tissue
102
primary cell
1
cell line
Organ
194
liver
Project
296
AMP
T1D
Genome assembly (visualization)
215
hg19
162
GRCh38
Lab
296
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
award.project!
T1D
files.file_type!
bed bedMethyl
bigBed narrowPeak
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
296 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
cell line
HepG2
1
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