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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
37
DNase-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
2
RRBS
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
98
DNA binding
47
DNA accessibility
15
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
76
histone
76
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
69
October, 2019
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
Available data
131
bam
120
bigWig
114
bed narrowPeak
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
169
Homo sapiens
Biosample type
156
tissue
13
primary cell
Organ
906
pancreas
788
liver
680
connective tissue
514
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
158
bone element
141
artery
121
limb
92
musculature of body
61
blood
61
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
169
AMP
Genome assembly (visualization)
128
hg19
110
GRCh38
Lab
169
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
award.project!
T1D
files.file_type!
bigBed bedMethyl
organ_slims!
esophagus
BIOSAMPLE
ASSAY
169 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
2
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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