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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
75
ChIP-seq
3
Hi-C
2
total RNA-seq
1
MPRA
Assay category
100
DNA accessibility
75
DNA binding
3
3D chromatin structure
2
Transcription
Target of assay
34
histone
34
histone modification
30
narrow histone mark
27
control
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
218
June, 2019
200
May, 2022
196
August, 2021
166
February, 2023
156
February, 2021
152
May, 2020
124
May, 2021
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
15
May, 2023
14
March, 2020
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
268
bam
241
bigWig
tsv
50
tagAlign
48
bed narrowPeak
30
fastq
21
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
180
Homo sapiens
Biosample type
105
primary cell
57
tissue
19
cell line
Organ
50
liver
18
blood
18
bodily fluid
7
spleen
3
epithelium
3
pancreas
Project
178
AMP
3
HPAP
Genome assembly (visualization)
96
hg19
40
GRCh38
Lab
178
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
T1D
files.file_type!
tsv
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
MPRA
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 27 more…
tissue
liver
50
spleen
7
cell line
GM12878
18
MIN6
1
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