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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
50
ChIP-seq
2
total RNA-seq
1
Hi-C
Assay category
104
DNA accessibility
50
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
298
October, 2019
218
June, 2019
200
May, 2022
196
August, 2021
166
February, 2023
156
February, 2021
152
May, 2020
124
May, 2021
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
15
May, 2023
14
March, 2020
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
239
bam
215
bigWig
tsv
50
tagAlign
27
bed narrowPeak
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
157
Homo sapiens
Biosample type
102
primary cell
55
tissue
Organ
50
liver
5
pancreas
Project
157
AMP
Genome assembly (visualization)
75
hg19
21
GRCh38
Lab
152
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
inconsistent ontology term
award.project!
T1D
files.file_type!
tsv
month_released!
November, 2020
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
tissue
liver
50
islet of Langerhans
4
1
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