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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
68
DNase-seq
8
ATAC-seq
1
FAIRE-seq
Assay category
272
DNA binding
77
DNA accessibility
Target of assay
216
histone
216
histone modification
121
narrow histone mark
95
broad histone mark
54
transcription factor
13
RNA binding protein
10
chromatin remodeller
Date released
123
October, 2019
64
November, 2017
62
June, 2019
31
May, 2019
27
December, 2018
15
January, 2019
14
November, 2018
6
February, 2021
6
October, 2017
1
July, 2019
Available data
417
bam
368
bigWig
349
bed narrowPeak
265
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
81
fastq
74
bigBed broadPeak
71
bed bed3+
33
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
349
Homo sapiens
Biosample type
284
tissue
54
cell line
11
primary cell
Organ
441
liver
210
pancreas
203
brain
191
heart
183
kidney
149
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
349
AMP
Genome assembly (visualization)
346
GRCh38
287
hg19
Lab
349
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
award.project!
T1D
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
2
1
brain
11
14
tibial artery
18
2
1
muscle of leg
6
13
layer of hippocampus
17
+ See 80 more…
cell line
GM12878
54
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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