Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
DNase-seq
73
ChIP-seq
Assay category
160
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
143
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
2554
bam
2307
bigWig
1343
bed narrowPeak
1101
fastq
1068
tsv
872
bigBed narrowPeak
298
tagAlign
270
bed broadPeak
233
bigBed broadPeak
220
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
233
Homo sapiens
Biosample type
149
tissue
59
cell line
24
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
heart
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
233
AMP
Genome assembly (visualization)
219
hg19
217
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
award.project!
T1D
month_released!
May, 2021
organ_slims!
epithelium
heart
BIOSAMPLE
ASSAY
233 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 33 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download