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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
15
Transcription
5
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
6
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
29
Homo sapiens
Biosample type
25
tissue
4
primary cell
Organ
840
pancreas
733
liver
659
connective tissue
485
adipose tissue
460
epithelium
351
kidney
346
heart
282
brain
196
vasculature
191
blood vessel
150
bone element
122
limb
105
artery
96
musculature of body
51
blood
51
bodily fluid
43
nerve
37
embryo
29
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
29
AMP-T2D consortium
award.project!
T1D
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2023
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
2
1
1
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