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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
34
Homo sapiens
Biosample type
34
cell line
Organ
31
liver
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
15
hg19
Lab
2891
AMP-T2D consortium
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
award.project!
T1D
month_released!
October, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
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