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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
20
ChIP-seq
14
total RNA-seq
Assay category
23
DNA accessibility
20
DNA binding
14
Transcription
Target of assay
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
33
May, 2021
24
May, 2022
Available data
24
bam
24
fastq
18
bed narrowPeak
10
bigWig
6
txt
2
bed bed3+
Organism
57
Homo sapiens
Biosample type
27
in vitro differentiated cells
25
tissue
5
primary cell
Organ
25
pancreas
Project
T1D
57
AMP
Genome assembly (visualization)
28
hg19
Lab
2746
AMP-T2D consortium
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
award.project!
T1D
lab.title!
Klaus Kaestner, Upenn
month_released!
November, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
ChIP-seq
total RNA-seq
in vitro differentiated cells
embryonic stem cell
5
17
5
tissue
islet of Langerhans
18
6
pancreas
1
primary cell
CD8-positive, alpha-beta T cell
3
2
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