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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
68
DNase-seq
20
total RNA-seq
11
ATAC-seq
2
pCHi-C
Assay category
284
DNA binding
79
DNA accessibility
20
Transcription
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
45
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
343
bam
296
bigWig
294
bed narrowPeak
210
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
68
bed bed3+
22
tsv
21
fastq
1
bed bed3
1
tagAlign bed3+
Organism
385
Homo sapiens
Biosample type
371
tissue
14
primary cell
Organ
906
pancreas
780
liver
665
connective tissue
507
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
158
bone element
138
artery
117
limb
86
musculature of body
60
eye
43
nerve
37
embryo
34
blood
34
bodily fluid
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
385
AMP
Genome assembly (visualization)
300
GRCh38
243
hg19
Lab
385
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
award.project!
T1D
month_released!
December, 2018
July, 2019
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
+ See 88 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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