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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
October, 2017
1
October, 2019
Available data
440
bam
422
bigWig
401
tsv
42
fastq
9
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
456
Homo sapiens
Biosample type
454
tissue
2
primary cell
1
in vitro differentiated cells
Organ
722
pancreas
689
liver
590
connective tissue
457
adipose tissue
377
epithelium
324
kidney
260
heart
150
bone element
130
vasculature
125
blood vessel
94
brain
86
artery
73
limb
63
musculature of body
60
blood
60
bodily fluid
27
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
8
skeleton
7
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
457
AMP
Genome assembly (visualization)
422
GRCh38
422
hg19
Lab
457
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
award.project!
T1D
month_released!
February, 2023
October, 2017
target.investigated_as!
histone
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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