Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
96
candidate regulatory elements
63
target gene predictions
50
chromatin state
20
accessible chromatin
9
histone modifications
7
binding sites
3
gene expression
3
variant allelic effects
2
eQTL
Date released
140
September, 2022
64
February, 2021
16
November, 2021
10
June, 2020
6
February, 2024
6
May, 2021
3
August, 2017
3
March, 2024
2
January, 2022
2
March, 2020
May, 2020
1
October, 2022
Available data
201
bed bed3+
47
bed bed9
10
bigWig
3
tsv
Organism
253
Homo sapiens
Biosample type
199
tissue
34
cell line
20
primary cell
Organ
914
epithelium
633
kidney
448
connective tissue
447
brain
370
musculature of body
311
lung
289
intestine
251
pancreas
251
vasculature
244
heart
234
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
193
blood vessel
174
large intestine
153
liver
146
extraembryonic component
119
stomach
107
eye
87
mammary gland
86
adipose tissue
86
bone element
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
placenta
70
artery
64
penis
62
lymph node
61
ureter
50
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
23
ovary
23
thyroid gland
22
nerve
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
10
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
237
AMP
16
ENCODE
Genome assembly (visualization)
248
hg19
67
GRCh38
award.project!
T1D
month_released!
May, 2020
organ_slims!
small intestine
BIOSAMPLE
TYPE
253 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
binding sites
gene expression
variant allelic effects
eQTL
tissue
large intestine
27
14
13
1
1
thymus
20
13
11
1
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
Peyer's patch
7
3
3
1
+ See 13 more…
cell line
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
HCT-116 cell
1
1
2
RKO
1
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
enterocyte
3
3
enteric smooth muscle cell
2
2
paneth cell
1
1
fetal thymocyte
1
+ See 1 more…
See all biosamples
Download