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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
single cell RNA-seq
10
MeRIP-seq
5
ATAC-seq
4
total RNA-seq
1
DNase-seq
1
Hi-C
Assay category
53
Transcription
6
DNA accessibility
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
0
January, 2021
Available data
56
bam
54
bigWig
53
tsv
45
fastq
2
bed broadPeak
2
bed narrowPeak
1
bed bed3+
1
bedpe
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
70
Homo sapiens
Biosample type
49
primary cell
15
tissue
6
cell line
Organ
54
pancreas
39
epithelium
8
connective tissue
Project
70
AMP
T1D
Genome assembly (visualization)
58
hg19
57
GRCh38
Lab
55
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
6
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
70 results
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Clear Filters
single cell RNA-seq
MeRIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
primary cell
pancreatic delta cell
7
osteoblast
1
4
1
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 6 more…
tissue
islet of Langerhans
6
4
4
1
cell line
EndoC_BH1
6
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