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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
4
single cell RNA-seq
2
RNA microarray
1
FAIRE-seq
Assay category
54
DNA binding
10
DNA accessibility
9
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
340
November, 2017
319
August, 2021
307
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
76
bam
72
fastq
70
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
9
tsv
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
82
Homo sapiens
Biosample type
45
cell line
29
tissue
6
primary cell
2
in vitro differentiated cells
Organ
42
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
6
epithelium
3
kidney
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
69
GRCh38
63
hg19
Lab
82
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
award.project!
T1D
organ_slims!
spinal cord
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
single cell RNA-seq
RNA microarray
FAIRE-seq
cell line
HepG2
29
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 5 more…
primary cell
hepatocyte
5
pancreatic cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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