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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
163
DNA accessibility
65
Transcription
31
DNA binding
26
DNA methylation
4
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
709
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
296
May, 2020
246
May, 2021
245
October, 2019
200
May, 2022
186
June, 2019
182
February, 2023
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
56
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
267
bam
262
bigWig
185
bed narrowPeak
180
bigBed narrowPeak
159
bed bed3+
155
bed broadPeak
155
bigBed broadPeak
65
tsv
22
bed bedMethyl
22
bigBed bedMethyl
4
hdf5
Organism
289
Homo sapiens
Biosample type
203
tissue
86
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
289
AMP
Genome assembly (visualization)
256
GRCh38
246
hg19
Lab
289
AMP-T2D consortium
Audit category:
27
inconsistent ontology term
award.project!
T1D
organ_slims!
limb
thymus
BIOSAMPLE
ASSAY
289 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
kidney
13
1
1
brain
12
1
heart left ventricle
3
2
1
4
2
renal cortex interstitium
11
+ See 45 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 28 more…
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