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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
110
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
69
transcription factor
35
histone
35
histone modification
26
RNA binding protein
20
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
120
bigWig
113
bed narrowPeak
88
fastq
87
bam
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
128
Homo sapiens
Biosample type
66
tissue
61
cell line
1
primary cell
Organ
53
liver
40
heart
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
128
AMP
Genome assembly (visualization)
119
GRCh38
71
hg19
Lab
88
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
award.project!
T1D
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
left cardiac atrium
40
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic cell
1
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