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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
37
DNase-seq
23
ATAC-seq
23
total RNA-seq
4
Hi-C
4
pCHi-C
1
WGBS
Assay category
60
DNA accessibility
45
DNA binding
23
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
12
control
Date released
64
October, 2019
35
June, 2019
17
February, 2023
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
91
bam
89
bed narrowPeak
73
bigWig
67
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
137
Homo sapiens
Biosample type
137
tissue
Organ
912
pancreas
791
liver
683
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
93
hg19
78
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
award.project!
T1D
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
WGBS
tissue
tibial nerve
35
2
1
5
islet of Langerhans
3
1
14
4
muscle of leg
7
13
1
retina
3
15
3
muscle of arm
17
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