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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1776ChIP-seq
  • 520ATAC-seq
  • 212DNase-seq
  • 75WGBS
  • 65snATAC-seq
  • 40pCHi-C
  • 34Hi-C
  • 23total RNA-seq
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3single cell RNA-seq
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1776DNA binding
  • 802DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 26Transcription
  • 1DNA sequencing
Target of assay
  • 923histone modification
  • 922histone
  • 514transcription factor
  • 468narrow histone mark
  • 453broad histone mark
  • 337control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 288October, 2019
  • 218June, 2019
  • 151May, 2020
  • 140May, 2022
  • 133August, 2021
  • 120May, 2019
  • 115May, 2021
  • 94December, 2017
  • 92February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 46March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1917bam
  • 1723bed narrowPeak
  • 1699bigWig
  • 1036bigBed narrowPeak
  • 985fastq
  • 316bed broadPeak
  • 307tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 77tsv
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2785Homo sapiens
Biosample type
  • 1428tissue
  • 561primary cell
  • 532cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 601liver
  • 424pancreas
  • 318epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 207connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2628AMP
  • T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1742hg19
  • 1658GRCh38
  • 5hg18
Lab
  • 2359AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 93Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 120inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
award.project!
  • T1D
BIOSAMPLE
ASSAY

2785 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
total RNA-seq
RRBS
FAIRE-seq
GRO-seq
Capture-C
single cell RNA-seq
DNAme array
whole genome sequencing assay
tissue
liver1452023111
islet of Langerhans6957114311
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell332
naive thymus-derived CD4-positive, alpha-beta T cell222
cell line
HepG2378112251
GM12878601
EndoC_BH1131912
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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