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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ATAC-seq
77
ChIP-seq
71
total RNA-seq
45
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
97
DNA accessibility
77
DNA binding
71
Transcription
47
DNA methylation
9
3D chromatin structure
Target of assay
52
control
24
histone
24
histone modification
14
narrow histone mark
10
broad histone mark
6
transcription factor
5
nucleotide modification
1
RNA binding protein
Date released
86
May, 2022
56
February, 2023
50
August, 2017
19
September, 2020
17
May, 2021
11
October, 2018
11
October, 2019
10
November, 2020
8
January, 2021
7
August, 2020
6
September, 2017
5
March, 2019
5
March, 2020
4
July, 2018
4
November, 2018
4
November, 2019
3
August, 2021
3
October, 2022
2
July, 2019
1
August, 2022
1
May, 2019
1
October, 2017
Available data
686
bam
621
bigWig
471
fastq
tsv
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
312
Homo sapiens
Biosample type
170
primary cell
107
tissue
37
cell line
in vitro differentiated cells
Organ
314
pancreas
213
epithelium
175
liver
147
kidney
93
bone element
84
connective tissue
76
adipose tissue
57
brain
35
vasculature
34
heart
33
blood vessel
27
musculature of body
23
eye
23
limb
19
lung
15
blood
15
bodily fluid
11
nerve
10
spleen
9
artery
9
vein
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
146
HPAP
140
AMP
28
T1D
Genome assembly (visualization)
41
GRCh38
38
hg19
Lab
146
Klaus Kaestner, Upenn
118
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
28
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
award.project!
community
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
6
42
25
1
pancreatic beta cell
16
6
11
16
1
pancreatic endocrine cell
12
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
30
17
7
4
3
1
pancreas
3
1
2
4
1
1
body of pancreas
9
2
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
1
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