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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
28
DNase-seq
17
ATAC-seq
1
FAIRE-seq
Assay category
160
DNA binding
46
DNA accessibility
Target of assay
155
histone
155
histone modification
83
broad histone mark
72
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
127
May, 2021
47
June, 2019
21
October, 2019
4
May, 2019
3
August, 2021
2
November, 2020
1
August, 2017
1
February, 2021
Available data
611
bigWig
607
bam
fastq
295
bed narrowPeak
268
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
206
Homo sapiens
Biosample type
811
tissue
206
primary cell
57
cell line
39
in vitro differentiated cells
Organ
45
epithelium
22
kidney
17
connective tissue
17
vasculature
15
blood vessel
13
vein
9
musculature of body
6
heart
6
liver
5
brain
3
eye
Project
122
AMP
84
T1D
Genome assembly (visualization)
199
hg19
174
GRCh38
Lab
114
Kyle Gaulton, UCSD
92
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
award.project!
community
files.file_type!
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
endothelial cell of umbilical vein
10
2
1
epithelial cell of proximal tubule
8
1
skeletal muscle satellite cell
7
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