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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ATAC-seq
186
single cell RNA-seq
123
total RNA-seq
48
snATAC-seq
47
WGBS
39
ChIP-seq
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
311
Transcription
266
DNA accessibility
58
DNA methylation
39
DNA binding
10
3D chromatin structure
Target of assay
histone
91
histone modification
50
narrow histone mark
41
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
16
May, 2021
13
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
295
fastq
270
bam
242
bigWig
153
zippedFastqFolder
148
tsv
65
bed narrowPeak
48
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
tagAlign
1
bed bed3
1
csv
1
tar
Organism
685
Homo sapiens
Biosample type
2098
tissue
685
primary cell
617
cell line
255
in vitro differentiated cells
6
stem cell
Organ
300
epithelium
248
pancreas
30
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
360
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
257
hg19
202
GRCh38
Lab
360
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
32
inconsistent ontology term
31
audit script error
award.project!
community
lab.title!
Kyle Gaulton, UCSD
month_released!
September, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
685 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
32
12
42
31
6
1
pancreatic beta cell
19
12
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
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