Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
36
ChIP-seq
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
407
Transcription
267
DNA accessibility
57
DNA methylation
36
DNA binding
6
3D chromatin structure
Target of assay
histone
188
histone modification
96
broad histone mark
92
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
September, 2018
32
June, 2019
26
July, 2019
21
August, 2017
8
January, 2021
7
August, 2020
7
October, 2019
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
November, 2017
2
October, 2018
1
August, 2021
1
March, 2023
1
November, 2018
Available data
351
bam
328
bigWig
291
fastq
242
tsv
153
zippedFastqFolder
56
bed narrowPeak
39
bigBed narrowPeak
26
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
hdf5
2
tagAlign
1
bed bed3
1
csv
Organism
790
Homo sapiens
Biosample type
2071
tissue
790
primary cell
556
cell line
282
in vitro differentiated cells
6
stem cell
Organ
300
epithelium
248
pancreas
31
connective tissue
26
kidney
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
345
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
341
hg19
288
GRCh38
Lab
340
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
30
audit script error
award.project!
community
month_released!
September, 2018
organ_slims!
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
790 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
32
12
31
6
1
monocyte
54
15
1
1
pancreatic beta cell
11
19
12
16
6
1
exocrine cell
39
+ See 85 more…
See all biosamples
Download