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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ATAC-seq
174
single cell RNA-seq
163
ChIP-seq
118
total RNA-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
16
Hi-C
10
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
Transcription
223
DNA accessibility
163
DNA binding
20
DNA methylation
16
3D chromatin structure
Target of assay
141
histone
141
histone modification
72
broad histone mark
69
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
94
February, 2023
93
February, 2021
53
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
29
March, 2020
19
April, 2020
15
May, 2023
13
February, 2020
12
July, 2019
8
January, 2021
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
1
October, 2017
Available data
bam
1570
bigWig
1053
tsv
792
bed narrowPeak
445
bigBed narrowPeak
365
fastq
178
bed bed3+
177
bed broadPeak
157
txt
149
bigBed broadPeak
120
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
829
Homo sapiens
Biosample type
831
tissue
151
primary cell
103
in vitro differentiated cells
78
cell line
5
stem cell
Organ
201
kidney
181
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
736
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
154
GRCh38
102
hg19
Lab
504
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
9
audit script error
award.project!
community
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
organ_slims!
brain
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
29
41
26
7
4
3
1
4
bone element
84
liver
20
1
23
20
1
1
1
3
left cardiac atrium
18
40
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