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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
558
ChIP-seq
177
DNase-seq
16
WGBS
9
RRBS
4
FAIRE-seq
3
ATAC-seq
Assay category
558
DNA binding
184
DNA accessibility
25
DNA methylation
Target of assay
441
histone
441
histone modification
240
broad histone mark
201
narrow histone mark
65
transcription factor
52
control
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
96
October, 2019
93
May, 2019
80
August, 2017
78
November, 2017
64
April, 2019
50
May, 2020
45
October, 2018
36
December, 2017
23
November, 2018
16
July, 2019
14
October, 2017
6
January, 2019
3
December, 2018
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
760
Homo sapiens
Biosample type
767
tissue
367
cell line
208
primary cell
57
in vitro differentiated cells
Organ
184
brain
120
liver
95
heart
88
kidney
85
limb
78
pancreas
63
blood vessel
63
vasculature
56
musculature of body
26
nerve
25
artery
20
adipose tissue
20
connective tissue
18
ureter
15
spleen
3
eye
1
pericardium
1
pituitary gland
Project
767
AMP
Genome assembly (visualization)
630
GRCh38
590
hg19
Lab
767
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
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BIOSAMPLE
ASSAY
767 results
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ChIP-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
ATAC-seq
tissue
liver
108
2
1
heart left ventricle
28
3
2
1
kidney
18
13
1
1
body of pancreas
26
4
2
brain
14
14
1
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