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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
42
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
42
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
41
control
1
broad histone mark
1
histone
1
histone modification
Date released
272
August, 2021
202
February, 2023
180
May, 2022
158
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
March, 2023
Available data
151
bed narrowPeak
125
bam
125
tsv
bigWig
64
xls
60
fastq
57
txt
45
bigBed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
300
Homo sapiens
Biosample type
258
tissue
22
cell line
20
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
21
connective tissue
19
adipose tissue
18
liver
15
pancreas
6
blood vessel
6
vasculature
3
epithelium
2
artery
Project
301
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
149
AMP-T2D consortium
128
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
award.project!
community
files.file_type!
bigWig
csv
BIOSAMPLE
ASSAY
301 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 15 more…
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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