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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
77
ChIP-seq
22
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
DNase-seq
2
STARR-seq
1
RRBS
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
77
DNA binding
24
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
38
histone
38
histone modification
33
narrow histone mark
28
control
11
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
194
May, 2020
40
May, 2022
35
August, 2021
August, 2017
10
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
Available data
655
bam
604
bigWig
fastq
423
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
300
Homo sapiens
Biosample type
252
tissue
34
cell line
14
primary cell
Organ
530
connective tissue
455
pancreas
adipose tissue
393
heart
354
kidney
300
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
300
AMP
Genome assembly (visualization)
235
hg19
188
GRCh38
Lab
229
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
award.project!
community
files.file_type!
fastq
month_released!
August, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
300 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
DNase-seq
STARR-seq
RRBS
WGBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
55
20
1
1
1
1
right lobe of liver
3
2
1
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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