Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
14
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
42
DNA binding
14
Transcription
2
DNA accessibility
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
13
February, 2018
8
August, 2021
7
December, 2018
7
January, 2019
7
November, 2018
2
May, 2021
1
October, 2017
Available data
60
bam
51
fastq
45
bigWig
28
bed narrowPeak
15
tsv
13
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
58
Homo sapiens
Biosample type
28
in vitro differentiated cells
22
tissue
8
cell line
Organ
685
pancreas
680
liver
591
connective tissue
440
adipose tissue
317
epithelium
243
brain
205
heart
184
vasculature
179
blood vessel
144
kidney
113
limb
102
artery
66
bone element
60
blood
60
bodily fluid
56
musculature of body
42
nerve
36
embryo
22
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
58
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
58
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
award.project!
community
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
1
1
cell line
H1-hESC
8
Download