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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
18
total RNA-seq
3
DNase-seq
2
ATAC-seq
2
WGBS
Assay category
77
DNA binding
18
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
42
histone
42
histone modification
26
control
24
broad histone mark
18
narrow histone mark
9
transcription factor
3
other context
3
other post-translational modification
Date released
42
October, 2019
13
December, 2017
13
February, 2018
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
October, 2017
Available data
102
bam
76
bigWig
55
bed narrowPeak
51
fastq
39
bigBed narrowPeak
20
tsv
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
102
Homo sapiens
Biosample type
66
tissue
28
in vitro differentiated cells
8
cell line
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
102
AMP
Genome assembly (visualization)
76
GRCh38
74
hg19
Lab
102
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
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BIOSAMPLE
ASSAY
102 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
tissue
tibial nerve
35
4
2
1
spleen
20
1
1
2
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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