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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
4
ChIP-seq
3
small RNA-seq
2
DNase-seq
1
pCHi-C
Assay category
400
Transcription
4
DNA binding
2
DNA accessibility
Target of assay
4
transcription factor
Date released
386
February, 2021
12
July, 2019
4
August, 2017
2
February, 2020
1
June, 2019
1
March, 2020
1
November, 2018
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
407
Homo sapiens
Biosample type
405
tissue
2
primary cell
Organ
505
connective tissue
446
pancreas
407
adipose tissue
198
heart
187
liver
177
epithelium
102
kidney
81
vasculature
79
blood vessel
62
artery
61
brain
58
bone element
43
limb
43
musculature of body
18
ureter
17
embryo
9
eye
7
nerve
2
intestine
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
407
AMP
Genome assembly (visualization)
404
GRCh38
404
hg19
Lab
407
AMP-T2D consortium
Audit category:
4
missing controlled_by
award.project!
community
organ_slims!
blood
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
381
1
omental fat pad
5
1
2
subcutaneous adipose tissue
7
1
white adipose tissue
4
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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