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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
15
total RNA-seq
2
ATAC-seq
2
Hi-C
Assay category
30
DNA binding
15
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
11
transcription factor
8
broad histone mark
1
RNA binding protein
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
211
October, 2019
210
June, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
49
August, 2021
47
October, 2018
40
May, 2024
33
November, 2019
31
February, 2018
30
December, 2018
30
March, 2020
26
January, 2019
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
June, 2018
3
October, 2022
3
September, 2020
1
March, 2019
1
March, 2023
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
49
Homo sapiens
Biosample type
23
cell line
22
in vitro differentiated cells
3
primary cell
1
tissue
Organ
18
liver
8
embryo
3
epithelium
2
connective tissue
1
kidney
Project
49
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
31
AMP-T2D consortium
15
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
award.project!
community
month_released!
June, 2018
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
cell line
HepG2
14
1
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
13
7
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
tissue
kidney
1
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