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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
63
total RNA-seq
32
DNase-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
208
DNA binding
70
Transcription
35
DNA accessibility
3
3D chromatin structure
Target of assay
183
histone
183
histone modification
113
narrow histone mark
70
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
87
November, 2017
83
October, 2019
58
February, 2021
30
June, 2019
25
May, 2019
16
July, 2019
15
October, 2017
2
November, 2018
Available data
309
bam
280
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
316
Homo sapiens
Biosample type
296
tissue
20
primary cell
Organ
666
liver
628
pancreas
591
connective tissue
432
adipose tissue
303
epithelium
258
brain
226
heart
157
vasculature
152
blood vessel
131
kidney
91
limb
87
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
316
AMP
Genome assembly (visualization)
273
GRCh38
217
hg19
Lab
316
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
award.project!
community
BIOSAMPLE
ASSAY
316 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
bone tissue
58
brain
19
1
14
layer of hippocampus
21
caudate nucleus
15
1
substantia nigra
16
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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