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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
99
ChIP-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
Hi-C
1
WGBS
Assay category
162
Transcription
99
DNA binding
26
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
170
May, 2020
31
November, 2017
20
May, 2022
17
December, 2017
14
August, 2017
8
July, 2019
6
August, 2021
6
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
2
June, 2019
1
March, 2020
Available data
355
bam
289
bigWig
174
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
289
Homo sapiens
Biosample type
226
tissue
40
cell line
12
in vitro differentiated cells
11
primary cell
Organ
604
pancreas
530
connective tissue
408
adipose tissue
292
epithelium
289
liver
219
brain
207
heart
146
vasculature
142
blood vessel
122
kidney
91
limb
80
artery
68
musculature of body
58
bone element
31
nerve
26
embryo
18
ureter
15
vein
10
spleen
5
eye
4
blood
4
bodily fluid
1
pericardium
1
pituitary gland
Project
289
AMP
Genome assembly (visualization)
288
hg19
242
GRCh38
Lab
266
AMP-T2D consortium
20
Karen Mohlke, UNC
3
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
award.project!
community
target.investigated_as!
nucleotide modification
transcription factor
BIOSAMPLE
ASSAY
289 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
WGBS
tissue
liver
147
45
20
2
1
right lobe of liver
2
5
1
1
2
cell line
HepG2
5
34
1
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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