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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
33
ATAC-seq
28
ChIP-seq
7
pCHi-C
6
DNase-seq
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
39
DNA accessibility
28
DNA binding
1
DNA methylation
Target of assay
19
control
6
RNA binding protein
6
transcription factor
3
histone
3
histone modification
3
narrow histone mark
Date released
386
February, 2021
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
432
bam
414
bigWig
406
tsv
43
bed narrowPeak
26
fastq
14
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
495
Homo sapiens
Biosample type
487
tissue
8
primary cell
1
in vitro differentiated cells
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
495
AMP
1
T1D
Genome assembly (visualization)
445
hg19
414
GRCh38
Lab
495
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
award.project!
community
month_released!
August, 2017
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
3
1
islet of Langerhans
14
1
2
4
retina
3
15
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
1
11
2
1
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primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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