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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
55
total RNA-seq
45
ATAC-seq
8
snATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
71
DNA binding
57
Transcription
55
DNA accessibility
Target of assay
56
transcription factor
11
RNA binding protein
10
chromatin remodeller
10
control
3
histone
3
histone modification
3
narrow histone mark
Date released
66
February, 2021
35
February, 2023
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
1
January, 2018
Available data
136
bam
119
bigWig
107
bed narrowPeak
60
fastq
59
bigBed narrowPeak
57
tsv
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
183
Homo sapiens
Biosample type
127
cell line
46
tissue
10
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
8
T1D
Genome assembly (visualization)
161
GRCh38
127
hg19
Lab
175
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
award.project!
community
organ_slims!
limb
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
tissue
coronary artery
5
1
36
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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