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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
34
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
ATAC-seq
3
WGBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
Assay category
119
DNA binding
46
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
57
transcription factor
40
histone
40
histone modification
24
broad histone mark
20
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
43
June, 2019
34
December, 2018
26
August, 2017
25
January, 2019
24
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
6
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
1
October, 2017
Available data
141
bam
139
bigWig
128
bed narrowPeak
114
bigBed narrowPeak
86
fastq
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
15
tagAlign
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
190
Homo sapiens
Biosample type
107
tissue
61
cell line
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
182
AMP
8
T1D
Genome assembly (visualization)
142
hg19
123
GRCh38
Lab
182
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
award.project!
community
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
small RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
spleen
20
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
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cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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