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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
47
DNA accessibility
33
Transcription
31
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
19
April, 2020
18
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
March, 2020
3
May, 2019
2
November, 2018
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
27
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
118
Homo sapiens
Biosample type
101
tissue
18
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
19
LungMap
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
100
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
award.project!
community
target.investigated_as!
histone
BIOSAMPLE
ASSAY
119 results
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DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
1
lung
9
10
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
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primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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