Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1459total RNA-seq
  • 366single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 1843Transcription
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 649February, 2021
  • 186August, 2021
  • 182May, 2021
  • 168July, 2018
  • 145May, 2020
  • 96August, 2017
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 15March, 2020
  • 14November, 2020
  • 10April, 2020
  • 10December, 2019
  • 4May, 2023
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1478tsv
  • 1342bam
  • 1337bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1947Homo sapiens
Biosample type
  • 1325tissue
  • 374primary cell
  • 138in vitro differentiated cells
  • 121cell line
Organ
  • 497pancreas
  • 476connective tissue
  • 401adipose tissue
  • 204epithelium
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 14embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1664AMP
  • 177HPAP
  • 60T1D
  • 47KPMP
  • 10LungMap
  • community
Genome assembly (visualization)
  • 1338hg19
  • 1336GRCh38
Lab
  • 1549AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 70Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
Audit category:
  • 226inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
award.project!
  • community
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1958 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
ChIP-seq
STARR-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
snATAC-seq
tissue
adipose tissue382
islet of Langerhans29264
liver16711
kidney4964
bone element84
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte52
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
HepG292
H1-hESC8
HEK293T2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego