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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
23
ATAC-seq
14
total RNA-seq
Assay category
50
DNA binding
23
DNA accessibility
14
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
63
May, 2021
24
May, 2022
Available data
38
bed narrowPeak
30
bigWig
24
bam
24
fastq
6
txt
2
bed bed3+
Organism
87
Homo sapiens
Biosample type
37
in vitro differentiated cells
25
primary cell
25
tissue
Organ
25
pancreas
Project
196
T1D
87
AMP
Genome assembly (visualization)
48
hg19
Lab
3471
AMP-T2D consortium
142
Katalin Susztak, Upenn
87
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
25
Patrick T. Ellinor, Broad
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
award.project!
HPAP
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
total RNA-seq
in vitro differentiated cells
embryonic stem cell
27
5
5
primary cell
CD8-positive, alpha-beta T cell
23
2
tissue
islet of Langerhans
18
6
pancreas
1
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