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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
65
total RNA-seq
41
ChIP-seq
11
single cell RNA-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
85
DNA accessibility
76
Transcription
41
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
14
control
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
nucleotide modification
Date released
152
August, 2021
May, 2022
43
May, 2021
14
May, 2023
10
November, 2020
5
March, 2019
Available data
152
bed narrowPeak
bigWig
64
xls
60
txt
10
tsv
4
bed bed3+
3
bed bedgraph
3
hic
2
bed broadPeak
2
bedpe bed3+
2
fastq
1
bam
1
bedpe
1
vcf
Organism
224
Homo sapiens
Biosample type
154
tissue
44
in vitro differentiated cells
26
cell line
Organ
144
kidney
18
pancreas
17
liver
6
epithelium
2
connective tissue
Project
224
AMP
180
HPAP
56
T1D
47
KPMP
19
LungMap
4
community
ITG
Genome assembly (visualization)
77
GRCh38
7
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
43
Kyle Gaulton, UCSD
24
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
Audit category:
7
inconsistent ontology term
award.project!
ITG
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
224 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
4
1
4
2
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
37
adipocyte
1
osteoblast
1
cell line
HepG2
9
4
2
1
1
EndoC_BH1
6
HEK293T
2
Synthesized DNA
1
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