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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1301ChIP-seq
  • 1219total RNA-seq
  • 442ATAC-seq
  • 228single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 34pCHi-C
  • 27WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 8snATAC-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1DNAme array
Assay category
  • 1465Transcription
  • 1301DNA binding
  • 665DNA accessibility
  • 49DNA methylation
  • 263D chromatin structure
Target of assay
  • 893histone modification
  • 892histone
  • 453narrow histone mark
  • 438broad histone mark
  • 260control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 574February, 2021
  • 411August, 2017
  • 295May, 2020
  • 284October, 2019
  • 275August, 2021
  • 226May, 2021
  • 218June, 2019
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 105February, 2023
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 49April, 2018
  • 49March, 2020
  • 45November, 2019
  • 40May, 2024
  • 39February, 2018
  • 27November, 2018
  • 25February, 2020
  • 23October, 2017
  • 15May, 2023
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 5March, 2019
  • 4August, 2018
  • 3June, 2018
  • 1August, 2022
Available data
  • 2628bam
  • 2455bigWig
  • 1379tsv
  • 1327bed narrowPeak
  • 762fastq
  • 687bigBed narrowPeak
  • 294tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 3633Homo sapiens
Biosample type
  • 2680tissue
  • cell line
  • 559primary cell
  • 394in vitro differentiated cells
  • 8stem cell
Organ
  • 683connective tissue
  • 672pancreas
  • 491adipose tissue
  • 390liver
  • 327heart
  • 293epithelium
  • 288kidney
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 158bone element
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3641AMP
  • 324HPAP
  • 235T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 2498hg19
  • 2470GRCh38
  • 5hg18
Lab
  • 3293AMP-T2D consortium
  • 142Katalin Susztak, Upenn
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 256inconsistent ontology term
  • 27inconsistent control
  • 12audit script error
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

3641 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
snATAC-seq
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
DNAme array
tissue
islet of Langerhans692855761431114
adipose tissue2382313
liver145167201213111
kidney27497517131161
bone element84
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
embryonic stem cell40761
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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